GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_4F48CF05E Traes_1AL_4F48CF05E	ta_iwgsc_1al_v2_3885391	694	4469	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_4F48CF05E.1 Traes_1AL_4F48CF05E.1 PAC:31922764	High	No	1979		Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -31.395 AMFE: -0.633 GC content %: 49.570
Taestivum_Traes_1AL_4F48CF05E.2 Traes_1AL_4F48CF05E.2 PAC:31922766	High	No	2938		Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -29.312 AMFE: -0.646 GC content %: 45.405
Taestivum_Traes_1AL_4F48CF05E.3 Traes_1AL_4F48CF05E.3 PAC:31922765	High	No	2845		Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -29.269 AMFE: -0.641 GC content %: 45.659

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).