GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_53C9AADB4 Traes_1AL_53C9AADB4	ta_iwgsc_1al_v2_3913630	9871	14772	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_53C9AADB4.1 Traes_1AL_53C9AADB4.1 PAC:31758963	Low	No	1053		Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -28.272 AMFE: -0.598 GC content %: 47.293
Taestivum_Traes_1AL_53C9AADB4.6 Traes_1AL_53C9AADB4.6 PAC:31758962	High	No	250		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -29.840 AMFE: -0.511 GC content %: 58.400

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).