GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_638400FD51 Traes_1AL_638400FD51	ta_iwgsc_1al_v2_3234807	4191	4961	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_638400FD51.1 Traes_1AL_638400FD51.1 PAC:31840589	High	No	770		Get ORF Coding potential... Type: noncoding Potential: -1.365 Folding energies... MFEI: -40.519 AMFE: -0.698 GC content %: 58.052
Taestivum_Traes_1AL_638400FD51.2 Traes_1AL_638400FD51.2 PAC:31840588	High	No	366		Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -45.464 AMFE: -0.642 GC content %: 70.765

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).