GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_63A09CA16 Traes_1AL_63A09CA16	ta_iwgsc_1al_v2_3780798	27	3800	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_63A09CA16.6 Traes_1AL_63A09CA16.6 PAC:31926952	Low	No	995		Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -29.719 AMFE: -0.637 GC content %: 46.633
Taestivum_Traes_1AL_63A09CA16.7 Traes_1AL_63A09CA16.7 PAC:31926953	High	No	1473		Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -28.445 AMFE: -0.660 GC content %: 43.109
Taestivum_Traes_1AL_63A09CA16.8 Traes_1AL_63A09CA16.8 PAC:31926954	Low	No	1861		Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -28.162 AMFE: -0.674 GC content %: 41.805

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).