Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1AL_695C34A5A Traes_1AL_695C34A5A |
ta_iwgsc_1al_v2_296308 | 4858 | 5794 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1AL_695C34A5A.1 Traes_1AL_695C34A5A.1 PAC:31855557 |
High | No | 366 | Get ORF Coding potential... Type: noncoding Potential: -0.537 Folding energies... MFEI: -48.661 AMFE: -0.652 GC content %: 74.590 | |
Taestivum_Traes_1AL_695C34A5A.2 Traes_1AL_695C34A5A.2 PAC:31855558 |
Low | Yes | 936 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -40.064 AMFE: -0.677 GC content %: 59.188 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1AL_695C34A5A.2 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_1AL_695C34A5A.2 | Rfam | 11.0 | MIR1122 | 1.8e-6 |