GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_6CFD61F68 Traes_1AL_6CFD61F68	ta_iwgsc_1al_v2_3935783	4	1072	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_6CFD61F68.1 Traes_1AL_6CFD61F68.1 PAC:31966758	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -29.382 AMFE: -0.677 GC content %: 43.406
Taestivum_Traes_1AL_6CFD61F68.2 Traes_1AL_6CFD61F68.2 PAC:31966757	High	No	957		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -26.301 AMFE: -0.668 GC content %: 39.394

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).