GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_8C2592FD6 Traes_1AL_8C2592FD6	ta_iwgsc_1al_v2_3896886	399	7741	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_8C2592FD6.4 Traes_1AL_8C2592FD6.4 PAC:31926579	High	No	623		Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -29.470 AMFE: -0.637 GC content %: 46.228
Taestivum_Traes_1AL_8C2592FD6.5 Traes_1AL_8C2592FD6.5 PAC:31926578	High	No	1294		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -35.765 AMFE: -0.677 GC content %: 52.859

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).