Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1AL_A70136DDE Traes_1AL_A70136DDE |
ta_iwgsc_1al_v2_3882342 | 1057 | 2150 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1AL_A70136DDE.1 Traes_1AL_A70136DDE.1 PAC:31828159 |
Low | No | 826 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -30.654 AMFE: -0.675 GC content %: 45.400 | |
Taestivum_Traes_1AL_A70136DDE.2 Traes_1AL_A70136DDE.2 PAC:31828160 |
Low | No | 1094 | Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -29.890 AMFE: -0.671 GC content %: 44.516 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1AL_A70136DDE.1 | RepBase (RepeatMasker) | 2014-01-31 | LATIDU1_TM | |
Taestivum_Traes_1AL_A70136DDE.2 | RepBase (RepeatMasker) | 2014-01-31 | LATIDU1_TM |