GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_B142A2977 Traes_1AL_B142A2977	ta_iwgsc_1al_v2_1013902	709	1507	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_B142A2977.1 Traes_1AL_B142A2977.1 PAC:31970574	High	No	492		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -46.829 AMFE: -0.727 GC content %: 64.431
Taestivum_Traes_1AL_B142A2977.2 Traes_1AL_B142A2977.2 PAC:31970575	High	No	788		Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -39.607 AMFE: -0.713 GC content %: 55.584

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).