Gene
Taestivum Traes 1AL B45E02BBA
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_B45E02BBA Traes_1AL_B45E02BBA |
ta_iwgsc_1al_v2_3878716 | 8 | 2887 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_B45E02BBA.1 Traes_1AL_B45E02BBA.1 PAC:32010961 |
Low | No | 1138 | Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -29.561 AMFE: -0.587 GC content %: 50.351 | |
| Taestivum_Traes_1AL_B45E02BBA.10 Traes_1AL_B45E02BBA.10 PAC:32010963 |
Low | No | 1789 | Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -27.982 AMFE: -0.621 GC content %: 45.053 | |
| Taestivum_Traes_1AL_B45E02BBA.11 Traes_1AL_B45E02BBA.11 PAC:32010964 |
Low | No | 1606 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -29.041 AMFE: -0.625 GC content %: 46.451 | |
| Taestivum_Traes_1AL_B45E02BBA.12 Traes_1AL_B45E02BBA.12 PAC:32010966 |
Low | No | 2377 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -27.606 AMFE: -0.635 GC content %: 43.458 | |
| Taestivum_Traes_1AL_B45E02BBA.13 Traes_1AL_B45E02BBA.13 PAC:32010965 |
Low | No | 2156 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -28.154 AMFE: -0.634 GC content %: 44.434 | |
| Taestivum_Traes_1AL_B45E02BBA.14 Traes_1AL_B45E02BBA.14 PAC:32010960 |
High | No | 1666 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -25.174 AMFE: -0.653 GC content %: 38.535 | |
| Taestivum_Traes_1AL_B45E02BBA.2 Traes_1AL_B45E02BBA.2 PAC:32010954 |
Low | No | 1250 | Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -29.288 AMFE: -0.582 GC content %: 50.320 | |
| Taestivum_Traes_1AL_B45E02BBA.3 Traes_1AL_B45E02BBA.3 PAC:32010953 |
Low | No | 1176 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -30.119 AMFE: -0.615 GC content %: 48.980 | |
| Taestivum_Traes_1AL_B45E02BBA.4 Traes_1AL_B45E02BBA.4 PAC:32010955 |
Low | No | 1763 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -28.434 AMFE: -0.625 GC content %: 45.491 | |
| Taestivum_Traes_1AL_B45E02BBA.5 Traes_1AL_B45E02BBA.5 PAC:32010956 |
Low | No | 1910 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.005 AMFE: -0.613 GC content %: 45.707 | |
| Taestivum_Traes_1AL_B45E02BBA.6 Traes_1AL_B45E02BBA.6 PAC:32010957 |
Low | No | 1690 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -28.710 AMFE: -0.610 GC content %: 47.101 | |
| Taestivum_Traes_1AL_B45E02BBA.7 Traes_1AL_B45E02BBA.7 PAC:32010958 |
Low | No | 1442 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -29.626 AMFE: -0.600 GC content %: 49.376 | |
| Taestivum_Traes_1AL_B45E02BBA.8 Traes_1AL_B45E02BBA.8 PAC:32010959 |
Low | No | 2196 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -28.015 AMFE: -0.626 GC content %: 44.763 | |
| Taestivum_Traes_1AL_B45E02BBA.9 Traes_1AL_B45E02BBA.9 PAC:32010962 |
Low | No | 1046 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -30.660 AMFE: -0.625 GC content %: 49.044 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
