GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_B772875BD Traes_1AL_B772875BD	ta_iwgsc_1al_v2_3005469	1065	2729	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_B772875BD.1 Traes_1AL_B772875BD.1 PAC:31814187	Low	No	562		Get ORF Coding potential... Type: noncoding Potential: -0.680 Folding energies... MFEI: -30.463 AMFE: -0.538 GC content %: 56.584
Taestivum_Traes_1AL_B772875BD.2 Traes_1AL_B772875BD.2 PAC:31814188	High	No	433		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -31.963 AMFE: -0.539 GC content %: 59.353
Taestivum_Traes_1AL_B772875BD.3 Traes_1AL_B772875BD.3 PAC:31814189	Low	No	314		Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -24.268 AMFE: -0.573 GC content %: 42.357
Taestivum_Traes_1AL_B772875BD.4 Traes_1AL_B772875BD.4 PAC:31814190	Low	No	331		Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -24.804 AMFE: -0.586 GC content %: 42.296
Taestivum_Traes_1AL_B772875BD.5 Traes_1AL_B772875BD.5 PAC:31814191	Low	No	773		Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.774 AMFE: -0.626 GC content %: 39.586

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).