GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_BF744E9B1 Traes_1AL_BF744E9B1	ta_iwgsc_1al_v2_3828508	1411	7770	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_BF744E9B1.4 Traes_1AL_BF744E9B1.4 PAC:31953682	High	No	901		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -25.250 AMFE: -0.667 GC content %: 37.847
Taestivum_Traes_1AL_BF744E9B1.6 Traes_1AL_BF744E9B1.6 PAC:31953684	High	No	1048		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -23.817 AMFE: -0.669 GC content %: 35.592
Taestivum_Traes_1AL_BF744E9B1.7 Traes_1AL_BF744E9B1.7 PAC:31953685	High	No	1013		Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -25.656 AMFE: -0.677 GC content %: 37.907
Taestivum_Traes_1AL_BF744E9B1.8 Traes_1AL_BF744E9B1.8 PAC:31953686	High	No	1160		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -24.241 AMFE: -0.676 GC content %: 35.862

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).