GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_C22E4F573 Traes_1AL_C22E4F573	ta_iwgsc_1al_v2_2416077	2360	3889	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_C22E4F573.1 Traes_1AL_C22E4F573.1 PAC:31896992	High	No	289		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -41.765 AMFE: -0.663 GC content %: 62.976
Taestivum_Traes_1AL_C22E4F573.2 Traes_1AL_C22E4F573.2 PAC:31896991	High	No	757		Get ORF Coding potential... Type: noncoding Potential: -0.504 Folding energies... MFEI: -30.964 AMFE: -0.618 GC content %: 50.066

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).