Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1AL_C4650CF30 Traes_1AL_C4650CF30 |
ta_iwgsc_1al_v2_3894296 | 696 | 5469 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1AL_C4650CF30.5 Traes_1AL_C4650CF30.5 PAC:31762603 |
Low | No | 2293 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -28.264 AMFE: -0.689 GC content %: 41.038 | |
Taestivum_Traes_1AL_C4650CF30.6 Traes_1AL_C4650CF30.6 PAC:31762604 |
High | No | 921 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -26.439 AMFE: -0.678 GC content %: 38.979 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1AL_C4650CF30.5 | RepBase (RepeatMasker) | 2014-01-31 | STOWAWAY17_SB |