GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_C4A75551B Traes_1AL_C4A75551B	ta_iwgsc_1al_v2_2429656	840	1815	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_C4A75551B.1 Traes_1AL_C4A75551B.1 PAC:31861346	Low	No	461		Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -36.421 AMFE: -0.617 GC content %: 59.002
Taestivum_Traes_1AL_C4A75551B.2 Traes_1AL_C4A75551B.2 PAC:31861347	High	No	333		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -23.423 AMFE: -0.534 GC content %: 43.844

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).