Gene
Taestivum Traes 1AL C67577AB2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_C67577AB2 Traes_1AL_C67577AB2 |
ta_iwgsc_1al_v2_3895266 | 2495 | 5506 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_C67577AB2.10 Traes_1AL_C67577AB2.10 PAC:31895192 |
High | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -25.560 AMFE: -0.635 GC content %: 40.280 | |
| Taestivum_Traes_1AL_C67577AB2.11 Traes_1AL_C67577AB2.11 PAC:31895193 |
High | No | 763 | Get ORF Coding potential... Type: noncoding Potential: -0.582 Folding energies... MFEI: -25.609 AMFE: -0.598 GC content %: 42.857 | |
| Taestivum_Traes_1AL_C67577AB2.12 Traes_1AL_C67577AB2.12 PAC:31895194 |
High | No | 1187 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -26.386 AMFE: -0.638 GC content %: 41.365 | |
| Taestivum_Traes_1AL_C67577AB2.13 Traes_1AL_C67577AB2.13 PAC:31895195 |
High | No | 1229 | Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -26.656 AMFE: -0.639 GC content %: 41.741 | |
| Taestivum_Traes_1AL_C67577AB2.14 Traes_1AL_C67577AB2.14 PAC:31895196 |
High | No | 1370 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -25.511 AMFE: -0.632 GC content %: 40.365 | |
| Taestivum_Traes_1AL_C67577AB2.15 Traes_1AL_C67577AB2.15 PAC:31895197 |
High | No | 1398 | Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -25.644 AMFE: -0.638 GC content %: 40.200 | |
| Taestivum_Traes_1AL_C67577AB2.16 Traes_1AL_C67577AB2.16 PAC:31895198 |
High | No | 1182 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -27.107 AMFE: -0.636 GC content %: 42.640 | |
| Taestivum_Traes_1AL_C67577AB2.17 Traes_1AL_C67577AB2.17 PAC:31895199 |
High | No | 800 | Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -27.688 AMFE: -0.629 GC content %: 44.000 | |
| Taestivum_Traes_1AL_C67577AB2.8 Traes_1AL_C67577AB2.8 PAC:31895190 |
High | No | 792 | Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -26.717 AMFE: -0.643 GC content %: 41.540 | |
| Taestivum_Traes_1AL_C67577AB2.9 Traes_1AL_C67577AB2.9 PAC:31895191 |
High | No | 795 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -24.780 AMFE: -0.618 GC content %: 40.126 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
