GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_C707AEFDC Traes_1AL_C707AEFDC	ta_iwgsc_1al_v2_3924596	5941	8935	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_C707AEFDC.1 Traes_1AL_C707AEFDC.1 PAC:31904655	Low	No	680		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -32.882 AMFE: -0.613 GC content %: 53.676
Taestivum_Traes_1AL_C707AEFDC.4 Traes_1AL_C707AEFDC.4 PAC:31904658	High	No	567		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -35.344 AMFE: -0.617 GC content %: 57.319

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).