Gene
Taestivum Traes 1AL D0971FDA8
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_D0971FDA8 Traes_1AL_D0971FDA8 |
ta_iwgsc_1al_v2_3964225 | 12 | 3738 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_D0971FDA8.1 Traes_1AL_D0971FDA8.1 PAC:31794097 |
Low | No | 3012 | Get ORF Coding potential... Type: noncoding Potential: -0.217 Folding energies... MFEI: -28.566 AMFE: -0.683 GC content %: 41.799 | |
| Taestivum_Traes_1AL_D0971FDA8.10 Traes_1AL_D0971FDA8.10 PAC:31794094 |
Low | No | 2762 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -27.759 AMFE: -0.664 GC content %: 41.818 | |
| Taestivum_Traes_1AL_D0971FDA8.11 Traes_1AL_D0971FDA8.11 PAC:31794096 |
Low | No | 3134 | Get ORF Coding potential... Type: noncoding Potential: -0.220 Folding energies... MFEI: -28.334 AMFE: -0.678 GC content %: 41.768 | |
| Taestivum_Traes_1AL_D0971FDA8.12 Traes_1AL_D0971FDA8.12 PAC:31794100 |
Low | No | 2427 | Get ORF Coding potential... Type: noncoding Potential: -0.194 Folding energies... MFEI: -27.824 AMFE: -0.665 GC content %: 41.862 | |
| Taestivum_Traes_1AL_D0971FDA8.13 Traes_1AL_D0971FDA8.13 PAC:31794104 |
Low | No | 3135 | Get ORF Coding potential... Type: noncoding Potential: -0.220 Folding energies... MFEI: -28.396 AMFE: -0.680 GC content %: 41.754 | |
| Taestivum_Traes_1AL_D0971FDA8.14 Traes_1AL_D0971FDA8.14 PAC:31794105 |
Low | No | 2739 | Get ORF Coding potential... Type: noncoding Potential: -0.161 Folding energies... MFEI: -28.080 AMFE: -0.678 GC content %: 41.402 | |
| Taestivum_Traes_1AL_D0971FDA8.15 Traes_1AL_D0971FDA8.15 PAC:31794106 |
High | No | 2942 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -28.368 AMFE: -0.690 GC content %: 41.094 | |
| Taestivum_Traes_1AL_D0971FDA8.2 Traes_1AL_D0971FDA8.2 PAC:31794093 |
Low | No | 2802 | Get ORF Coding potential... Type: noncoding Potential: -0.180 Folding energies... MFEI: -27.730 AMFE: -0.660 GC content %: 42.006 | |
| Taestivum_Traes_1AL_D0971FDA8.3 Traes_1AL_D0971FDA8.3 PAC:31794103 |
Low | No | 3153 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -28.421 AMFE: -0.684 GC content %: 41.579 | |
| Taestivum_Traes_1AL_D0971FDA8.4 Traes_1AL_D0971FDA8.4 PAC:31794101 |
Low | No | 2907 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -28.707 AMFE: -0.686 GC content %: 41.830 | |
| Taestivum_Traes_1AL_D0971FDA8.5 Traes_1AL_D0971FDA8.5 PAC:31794092 |
Low | No | 1794 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -27.770 AMFE: -0.674 GC content %: 41.193 | |
| Taestivum_Traes_1AL_D0971FDA8.6 Traes_1AL_D0971FDA8.6 PAC:31794098 |
Low | No | 2396 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -28.247 AMFE: -0.687 GC content %: 41.110 | |
| Taestivum_Traes_1AL_D0971FDA8.7 Traes_1AL_D0971FDA8.7 PAC:31794102 |
Low | No | 3305 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -28.351 AMFE: -0.678 GC content %: 41.785 | |
| Taestivum_Traes_1AL_D0971FDA8.8 Traes_1AL_D0971FDA8.8 PAC:31794095 |
Low | No | 3188 | Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -28.105 AMFE: -0.680 GC content %: 41.343 | |
| Taestivum_Traes_1AL_D0971FDA8.9 Traes_1AL_D0971FDA8.9 PAC:31794099 |
Low | No | 2744 | Get ORF Coding potential... Type: noncoding Potential: -0.207 Folding energies... MFEI: -27.693 AMFE: -0.663 GC content %: 41.764 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
