GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_E23936449 Traes_1AL_E23936449	ta_iwgsc_1al_v2_2855319	2	1079	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_E23936449.2 Traes_1AL_E23936449.2 PAC:31762159	High	No	368		Get ORF Coding potential... Type: noncoding Potential: -0.712 Folding energies... MFEI: -26.114 AMFE: -0.601 GC content %: 43.478
Taestivum_Traes_1AL_E23936449.3 Traes_1AL_E23936449.3 PAC:31762160	High	No	352		Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -25.682 AMFE: -0.583 GC content %: 44.034

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).