GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_F3F7B8B52 Traes_1AL_F3F7B8B52	ta_iwgsc_1al_v2_3896111	13296	15928	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_F3F7B8B52.2 Traes_1AL_F3F7B8B52.2 PAC:31906984	Low	Yes	991		Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -40.747 AMFE: -0.728 GC content %: 56.004
Taestivum_Traes_1AL_F3F7B8B52.3 Traes_1AL_F3F7B8B52.3 PAC:31906986	Low	No	584		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -23.356 AMFE: -0.614 GC content %: 38.014
Taestivum_Traes_1AL_F3F7B8B52.4 Traes_1AL_F3F7B8B52.4 PAC:31906987	Low	No	387		Get ORF Coding potential... Type: noncoding Potential: -0.733 Folding energies... MFEI: -31.111 AMFE: -0.669 GC content %: 46.512
Taestivum_Traes_1AL_F3F7B8B52.5 Traes_1AL_F3F7B8B52.5 PAC:31906988	High	No	499		Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -30.100 AMFE: -0.608 GC content %: 49.499

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).