GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_F663F247B Traes_1AL_F663F247B	ta_iwgsc_1al_v2_2708521	861	1661	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_F663F247B.1 Traes_1AL_F663F247B.1 PAC:31809234	High	No	699		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -28.755 AMFE: -0.634 GC content %: 45.351
Taestivum_Traes_1AL_F663F247B.2 Traes_1AL_F663F247B.2 PAC:31809233	High	No	616		Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -29.302 AMFE: -0.659 GC content %: 44.481

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).