GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AS_B47553013 Traes_1AS_B47553013	ta_iwgsc_1as_v1_3310233	544	2525	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AS_B47553013.1 Traes_1AS_B47553013.1 PAC:31904791	High	No	861		Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -27.747 AMFE: -0.594 GC content %: 46.690
Taestivum_Traes_1AS_B47553013.2 Traes_1AS_B47553013.2 PAC:31904792	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -17.443 AMFE: -0.509 GC content %: 34.247

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).