Gene
Taestivum Traes 1BL 172C4894D
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_172C4894D Traes_1BL_172C4894D |
ta_iwgsc_1bl_v1_3848331 | 3289 | 6653 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_172C4894D.1 Traes_1BL_172C4894D.1 PAC:31783543 |
High | No | 2681 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.841 AMFE: -0.641 GC content %: 40.321 | |
| Taestivum_Traes_1BL_172C4894D.10 Traes_1BL_172C4894D.10 PAC:31783552 |
Low | No | 608 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.280 AMFE: -0.549 GC content %: 46.053 | |
| Taestivum_Traes_1BL_172C4894D.11 Traes_1BL_172C4894D.11 PAC:31783545 |
High | No | 279 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -39.355 AMFE: -0.631 GC content %: 62.366 | |
| Taestivum_Traes_1BL_172C4894D.2 Traes_1BL_172C4894D.2 PAC:31783544 |
Low | No | 1057 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -33.160 AMFE: -0.633 GC content %: 52.412 | |
| Taestivum_Traes_1BL_172C4894D.3 Traes_1BL_172C4894D.3 PAC:31783542 |
Low | No | 2669 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -25.961 AMFE: -0.633 GC content %: 41.027 | |
| Taestivum_Traes_1BL_172C4894D.4 Traes_1BL_172C4894D.4 PAC:31783546 |
Low | No | 1336 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -31.138 AMFE: -0.637 GC content %: 48.877 | |
| Taestivum_Traes_1BL_172C4894D.5 Traes_1BL_172C4894D.5 PAC:31783547 |
Low | No | 1059 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -25.175 AMFE: -0.603 GC content %: 41.737 | |
| Taestivum_Traes_1BL_172C4894D.6 Traes_1BL_172C4894D.6 PAC:31783550 |
Low | No | 3094 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -25.168 AMFE: -0.628 GC content %: 40.078 | |
| Taestivum_Traes_1BL_172C4894D.7 Traes_1BL_172C4894D.7 PAC:31783548 |
Low | No | 2688 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.521 AMFE: -0.624 GC content %: 40.923 | |
| Taestivum_Traes_1BL_172C4894D.8 Traes_1BL_172C4894D.8 PAC:31783549 |
Low | No | 2708 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.694 AMFE: -0.627 GC content %: 40.953 | |
| Taestivum_Traes_1BL_172C4894D.9 Traes_1BL_172C4894D.9 PAC:31783551 |
Low | No | 2336 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -23.082 AMFE: -0.612 GC content %: 37.714 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_1BL_172C4894D.4 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.5 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.6 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.10 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.7 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.8 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.3 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV | |
| Taestivum_Traes_1BL_172C4894D.9 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N1_HV |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
