Gene
Taestivum Traes 1BL 244A707C6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_244A707C6 Traes_1BL_244A707C6 |
ta_iwgsc_1bl_v1_3873814 | 6469 | 11841 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_244A707C6.1 Traes_1BL_244A707C6.1 PAC:31814654 |
Low | No | 3215 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -27.518 AMFE: -0.675 GC content %: 40.747 | |
| Taestivum_Traes_1BL_244A707C6.10 Traes_1BL_244A707C6.10 PAC:31814657 |
Low | No | 2537 | Get ORF Coding potential... Type: noncoding Potential: -0.235 Folding energies... MFEI: -28.171 AMFE: -0.664 GC content %: 42.452 | |
| Taestivum_Traes_1BL_244A707C6.11 Traes_1BL_244A707C6.11 PAC:31814650 |
Low | No | 1567 | Get ORF Coding potential... Type: noncoding Potential: -0.277 Folding energies... MFEI: -31.863 AMFE: -0.684 GC content %: 46.586 | |
| Taestivum_Traes_1BL_244A707C6.12 Traes_1BL_244A707C6.12 PAC:31814659 |
Low | No | 2132 | Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -29.742 AMFE: -0.685 GC content %: 43.433 | |
| Taestivum_Traes_1BL_244A707C6.13 Traes_1BL_244A707C6.13 PAC:31814652 |
Low | No | 4351 | Get ORF Coding potential... Type: noncoding Potential: -0.079 Folding energies... MFEI: -25.680 AMFE: -0.664 GC content %: 38.658 | |
| Taestivum_Traes_1BL_244A707C6.14 Traes_1BL_244A707C6.14 PAC:31814662 |
Low | No | 3267 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -25.748 AMFE: -0.662 GC content %: 38.904 | |
| Taestivum_Traes_1BL_244A707C6.15 Traes_1BL_244A707C6.15 PAC:31814663 |
Low | No | 2798 | Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -27.852 AMFE: -0.671 GC content %: 41.494 | |
| Taestivum_Traes_1BL_244A707C6.16 Traes_1BL_244A707C6.16 PAC:31814669 |
Low | No | 4174 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -24.904 AMFE: -0.660 GC content %: 37.758 | |
| Taestivum_Traes_1BL_244A707C6.17 Traes_1BL_244A707C6.17 PAC:31814666 |
Low | No | 4578 | Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -24.729 AMFE: -0.662 GC content %: 37.353 | |
| Taestivum_Traes_1BL_244A707C6.18 Traes_1BL_244A707C6.18 PAC:31814668 |
Low | No | 3358 | Get ORF Coding potential... Type: noncoding Potential: -0.201 Folding energies... MFEI: -27.242 AMFE: -0.676 GC content %: 40.322 | |
| Taestivum_Traes_1BL_244A707C6.19 Traes_1BL_244A707C6.19 PAC:31814667 |
Low | No | 3441 | Get ORF Coding potential... Type: noncoding Potential: -0.016 Folding energies... MFEI: -27.358 AMFE: -0.675 GC content %: 40.541 | |
| Taestivum_Traes_1BL_244A707C6.2 Traes_1BL_244A707C6.2 PAC:31814660 |
Low | No | 1937 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -25.252 AMFE: -0.654 GC content %: 38.616 | |
| Taestivum_Traes_1BL_244A707C6.20 Traes_1BL_244A707C6.20 PAC:31814665 |
Low | No | 2995 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -27.863 AMFE: -0.674 GC content %: 41.369 | |
| Taestivum_Traes_1BL_244A707C6.21 Traes_1BL_244A707C6.21 PAC:31814670 |
Low | No | 1850 | Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -27.265 AMFE: -0.672 GC content %: 40.595 | |
| Taestivum_Traes_1BL_244A707C6.22 Traes_1BL_244A707C6.22 PAC:31814671 |
Low | No | 3201 | Get ORF Coding potential... Type: noncoding Potential: -0.200 Folding energies... MFEI: -27.057 AMFE: -0.667 GC content %: 40.550 | |
| Taestivum_Traes_1BL_244A707C6.23 Traes_1BL_244A707C6.23 PAC:31814672 |
Low | No | 4935 | Get ORF Coding potential... Type: noncoding Potential: -0.030 Folding energies... MFEI: -25.510 AMFE: -0.666 GC content %: 38.298 | |
| Taestivum_Traes_1BL_244A707C6.24 Traes_1BL_244A707C6.24 PAC:31814673 |
Low | No | 3570 | Get ORF Coding potential... Type: noncoding Potential: -0.017 Folding energies... MFEI: -26.679 AMFE: -0.661 GC content %: 40.336 | |
| Taestivum_Traes_1BL_244A707C6.25 Traes_1BL_244A707C6.25 PAC:31814674 |
Low | No | 2581 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -24.533 AMFE: -0.651 GC content %: 37.699 | |
| Taestivum_Traes_1BL_244A707C6.26 Traes_1BL_244A707C6.26 PAC:31814664 |
Low | No | 3435 | Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -24.102 AMFE: -0.660 GC content %: 36.507 | |
| Taestivum_Traes_1BL_244A707C6.3 Traes_1BL_244A707C6.3 PAC:31814649 |
Low | No | 3027 | Get ORF Coding potential... Type: noncoding Potential: -0.055 Folding energies... MFEI: -27.387 AMFE: -0.669 GC content %: 40.932 | |
| Taestivum_Traes_1BL_244A707C6.4 Traes_1BL_244A707C6.4 PAC:31814653 |
Low | No | 2994 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -27.401 AMFE: -0.672 GC content %: 40.782 | |
| Taestivum_Traes_1BL_244A707C6.5 Traes_1BL_244A707C6.5 PAC:31814661 |
Low | No | 4709 | Get ORF Coding potential... Type: noncoding Potential: -0.081 Folding energies... MFEI: -25.543 AMFE: -0.666 GC content %: 38.331 | |
| Taestivum_Traes_1BL_244A707C6.6 Traes_1BL_244A707C6.6 PAC:31814655 |
Low | No | 3397 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -26.445 AMFE: -0.658 GC content %: 40.183 | |
| Taestivum_Traes_1BL_244A707C6.7 Traes_1BL_244A707C6.7 PAC:31814658 |
Low | No | 1725 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -26.933 AMFE: -0.673 GC content %: 40.000 | |
| Taestivum_Traes_1BL_244A707C6.8 Traes_1BL_244A707C6.8 PAC:31814651 |
Low | No | 2444 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -28.249 AMFE: -0.670 GC content %: 42.185 | |
| Taestivum_Traes_1BL_244A707C6.9 Traes_1BL_244A707C6.9 PAC:31814656 |
Low | No | 2116 | Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -29.768 AMFE: -0.672 GC content %: 44.329 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
