Gene
Taestivum Traes 1BL 2EBD86DFD
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_2EBD86DFD Traes_1BL_2EBD86DFD |
ta_iwgsc_1bl_v1_3866817 | 1252 | 4069 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_2EBD86DFD.1 Traes_1BL_2EBD86DFD.1 PAC:31941784 |
Low | No | 883 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -33.986 AMFE: -0.657 GC content %: 51.755 | |
| Taestivum_Traes_1BL_2EBD86DFD.6 Traes_1BL_2EBD86DFD.6 PAC:31941785 |
High | No | 705 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -33.957 AMFE: -0.651 GC content %: 52.199 | |
| Taestivum_Traes_1BL_2EBD86DFD.7 Traes_1BL_2EBD86DFD.7 PAC:31941786 |
High | No | 861 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -30.592 AMFE: -0.607 GC content %: 50.407 | |
| Taestivum_Traes_1BL_2EBD86DFD.8 Traes_1BL_2EBD86DFD.8 PAC:31941787 |
High | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -31.347 AMFE: -0.614 GC content %: 51.066 | |
| Taestivum_Traes_1BL_2EBD86DFD.9 Traes_1BL_2EBD86DFD.9 PAC:31941783 |
Low | No | 505 | Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -33.842 AMFE: -0.619 GC content %: 54.653 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
