Gene
Taestivum Traes 1BL 3CADBB1AE
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_3CADBB1AE Traes_1BL_3CADBB1AE |
ta_iwgsc_1bl_v1_3803503 | 483 | 17846 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_3CADBB1AE.1 Traes_1BL_3CADBB1AE.1 PAC:31742771 |
High | No | 1055 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -34.654 AMFE: -0.647 GC content %: 53.555 | |
| Taestivum_Traes_1BL_3CADBB1AE.10 Traes_1BL_3CADBB1AE.10 PAC:31742770 |
High | No | 1980 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -36.354 AMFE: -0.680 GC content %: 53.434 | |
| Taestivum_Traes_1BL_3CADBB1AE.11 Traes_1BL_3CADBB1AE.11 PAC:31742769 |
High | No | 1832 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -37.686 AMFE: -0.693 GC content %: 54.367 | |
| Taestivum_Traes_1BL_3CADBB1AE.12 Traes_1BL_3CADBB1AE.12 PAC:31742767 |
High | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -34.296 AMFE: -0.659 GC content %: 52.023 | |
| Taestivum_Traes_1BL_3CADBB1AE.2 Traes_1BL_3CADBB1AE.2 PAC:31742760 |
High | No | 1693 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -38.216 AMFE: -0.693 GC content %: 55.109 | |
| Taestivum_Traes_1BL_3CADBB1AE.3 Traes_1BL_3CADBB1AE.3 PAC:31742761 |
High | No | 1750 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -37.411 AMFE: -0.691 GC content %: 54.171 | |
| Taestivum_Traes_1BL_3CADBB1AE.4 Traes_1BL_3CADBB1AE.4 PAC:31742762 |
High | No | 1827 | Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -37.553 AMFE: -0.691 GC content %: 54.351 | |
| Taestivum_Traes_1BL_3CADBB1AE.5 Traes_1BL_3CADBB1AE.5 PAC:31742763 |
High | No | 1788 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -36.124 AMFE: -0.680 GC content %: 53.132 | |
| Taestivum_Traes_1BL_3CADBB1AE.6 Traes_1BL_3CADBB1AE.6 PAC:31742764 |
High | No | 1951 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -36.294 AMFE: -0.679 GC content %: 53.460 | |
| Taestivum_Traes_1BL_3CADBB1AE.7 Traes_1BL_3CADBB1AE.7 PAC:31742765 |
High | No | 1900 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -37.200 AMFE: -0.684 GC content %: 54.368 | |
| Taestivum_Traes_1BL_3CADBB1AE.8 Traes_1BL_3CADBB1AE.8 PAC:31742766 |
High | No | 1848 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -36.802 AMFE: -0.681 GC content %: 54.004 | |
| Taestivum_Traes_1BL_3CADBB1AE.9 Traes_1BL_3CADBB1AE.9 PAC:31742768 |
High | No | 1810 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -36.420 AMFE: -0.684 GC content %: 53.260 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
