GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_44CA59DC9 Traes_1BL_44CA59DC9	ta_iwgsc_1bl_v1_3807337	2317	5061	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_44CA59DC9.2 Traes_1BL_44CA59DC9.2 PAC:31905304	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -28.642 AMFE: -0.638 GC content %: 44.893
Taestivum_Traes_1BL_44CA59DC9.3 Traes_1BL_44CA59DC9.3 PAC:31905305	High	No	877		Get ORF Coding potential... Type: noncoding Potential: -0.388 Folding energies... MFEI: -27.628 AMFE: -0.617 GC content %: 44.812
Taestivum_Traes_1BL_44CA59DC9.4 Traes_1BL_44CA59DC9.4 PAC:31905306	High	No	367		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -40.627 AMFE: -0.587 GC content %: 69.210

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).