GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_45150C207 Traes_1BL_45150C207	ta_iwgsc_1bl_v1_3916577	1	1927	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_45150C207.3 Traes_1BL_45150C207.3 PAC:31744357	High	No	677		Get ORF Coding potential... Type: noncoding Potential: -0.484 Folding energies... MFEI: -33.663 AMFE: -0.576 GC content %: 58.493
Taestivum_Traes_1BL_45150C207.4 Traes_1BL_45150C207.4 PAC:31744358	High	No	216		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -22.454 AMFE: -0.522 GC content %: 43.056

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).