Gene
Taestivum Traes 1BL 4BA918249
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_4BA918249 Traes_1BL_4BA918249 |
ta_iwgsc_1bl_v1_3814294 | 2562 | 9453 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_4BA918249.1 Traes_1BL_4BA918249.1 PAC:31860268 |
Low | No | 1225 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -29.086 AMFE: -0.612 GC content %: 47.510 | |
| Taestivum_Traes_1BL_4BA918249.10 Traes_1BL_4BA918249.10 PAC:31860261 |
Low | No | 3594 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -28.634 AMFE: -0.652 GC content %: 43.907 | |
| Taestivum_Traes_1BL_4BA918249.11 Traes_1BL_4BA918249.11 PAC:31860263 |
Low | No | 922 | Get ORF Coding potential... Type: noncoding Potential: -0.221 Folding energies... MFEI: -24.230 AMFE: -0.610 GC content %: 39.696 | |
| Taestivum_Traes_1BL_4BA918249.12 Traes_1BL_4BA918249.12 PAC:31860260 |
Low | No | 2225 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -24.966 AMFE: -0.630 GC content %: 39.640 | |
| Taestivum_Traes_1BL_4BA918249.13 Traes_1BL_4BA918249.13 PAC:31860266 |
Low | No | 3619 | Get ORF Coding potential... Type: noncoding Potential: -0.156 Folding energies... MFEI: -29.124 AMFE: -0.655 GC content %: 44.432 | |
| Taestivum_Traes_1BL_4BA918249.14 Traes_1BL_4BA918249.14 PAC:31860267 |
Low | No | 1481 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -26.097 AMFE: -0.588 GC content %: 44.362 | |
| Taestivum_Traes_1BL_4BA918249.15 Traes_1BL_4BA918249.15 PAC:31860269 |
Low | No | 4739 | Get ORF Coding potential... Type: noncoding Potential: -0.182 Folding energies... MFEI: -27.578 AMFE: -0.658 GC content %: 41.908 | |
| Taestivum_Traes_1BL_4BA918249.16 Traes_1BL_4BA918249.16 PAC:31860271 |
Low | No | 4920 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -27.506 AMFE: -0.656 GC content %: 41.951 | |
| Taestivum_Traes_1BL_4BA918249.17 Traes_1BL_4BA918249.17 PAC:31860270 |
Low | No | 4978 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -27.911 AMFE: -0.660 GC content %: 42.266 | |
| Taestivum_Traes_1BL_4BA918249.18 Traes_1BL_4BA918249.18 PAC:31860272 |
Low | No | 5312 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -27.652 AMFE: -0.656 GC content %: 42.169 | |
| Taestivum_Traes_1BL_4BA918249.19 Traes_1BL_4BA918249.19 PAC:31860257 |
Low | No | 6048 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -27.574 AMFE: -0.648 GC content %: 42.576 | |
| Taestivum_Traes_1BL_4BA918249.2 Traes_1BL_4BA918249.2 PAC:31860256 |
Low | No | 4723 | Get ORF Coding potential... Type: noncoding Potential: -0.182 Folding energies... MFEI: -27.868 AMFE: -0.665 GC content %: 41.901 | |
| Taestivum_Traes_1BL_4BA918249.3 Traes_1BL_4BA918249.3 PAC:31860254 |
Low | No | 5349 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -29.000 AMFE: -0.663 GC content %: 43.709 | |
| Taestivum_Traes_1BL_4BA918249.4 Traes_1BL_4BA918249.4 PAC:31860255 |
Low | No | 5154 | Get ORF Coding potential... Type: noncoding Potential: -0.186 Folding energies... MFEI: -27.988 AMFE: -0.659 GC content %: 42.452 | |
| Taestivum_Traes_1BL_4BA918249.5 Traes_1BL_4BA918249.5 PAC:31860258 |
Low | No | 1361 | Get ORF Coding potential... Type: noncoding Potential: -0.351 Folding energies... MFEI: -28.376 AMFE: -0.606 GC content %: 46.804 | |
| Taestivum_Traes_1BL_4BA918249.6 Traes_1BL_4BA918249.6 PAC:31860259 |
Low | No | 3655 | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -28.952 AMFE: -0.653 GC content %: 44.350 | |
| Taestivum_Traes_1BL_4BA918249.7 Traes_1BL_4BA918249.7 PAC:31860264 |
Low | No | 681 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -22.540 AMFE: -0.540 GC content %: 41.703 | |
| Taestivum_Traes_1BL_4BA918249.8 Traes_1BL_4BA918249.8 PAC:31860262 |
Low | No | 1659 | Get ORF Coding potential... Type: noncoding Potential: -0.345 Folding energies... MFEI: -28.083 AMFE: -0.602 GC content %: 46.655 | |
| Taestivum_Traes_1BL_4BA918249.9 Traes_1BL_4BA918249.9 PAC:31860265 |
Low | No | 2222 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -25.194 AMFE: -0.630 GC content %: 39.964 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
