GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_5AB8929EC Traes_1BL_5AB8929EC	ta_iwgsc_1bl_v1_3847302	6348	9167	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_5AB8929EC.2 Traes_1BL_5AB8929EC.2 PAC:31737228	Low	No	817		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -25.361 AMFE: -0.592 GC content %: 42.840
Taestivum_Traes_1BL_5AB8929EC.3 Traes_1BL_5AB8929EC.3 PAC:31737229	Low	No	843		Get ORF Coding potential... Type: noncoding Potential: -0.660 Folding energies... MFEI: -25.148 AMFE: -0.584 GC content %: 43.060
Taestivum_Traes_1BL_5AB8929EC.4 Traes_1BL_5AB8929EC.4 PAC:31737230	Low	No	583		Get ORF Coding potential... Type: noncoding Potential: -0.600 Folding energies... MFEI: -27.101 AMFE: -0.594 GC content %: 45.626
Taestivum_Traes_1BL_5AB8929EC.5 Traes_1BL_5AB8929EC.5 PAC:31737231	Low	No	400		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -32.675 AMFE: -0.505 GC content %: 64.750

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).