GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_5EDEAEC1C Traes_1BL_5EDEAEC1C	ta_iwgsc_1bl_v1_3919843	11143	13856	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_5EDEAEC1C.6 Traes_1BL_5EDEAEC1C.6 PAC:31966324	High	No	449		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -35.189 AMFE: -0.622 GC content %: 56.570
Taestivum_Traes_1BL_5EDEAEC1C.7 Traes_1BL_5EDEAEC1C.7 PAC:31966325	High	No	253		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -46.166 AMFE: -0.645 GC content %: 71.542

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).