Gene
Taestivum Traes 1BL 72B62E498
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_72B62E498 Traes_1BL_72B62E498 |
ta_iwgsc_1bl_v1_3838563 | 5820 | 11145 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_72B62E498.1 Traes_1BL_72B62E498.1 PAC:31858382 |
High | No | 359 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -31.671 AMFE: -0.592 GC content %: 53.482 | |
| Taestivum_Traes_1BL_72B62E498.10 Traes_1BL_72B62E498.10 PAC:31858383 |
High | No | 789 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -30.646 AMFE: -0.636 GC content %: 48.162 | |
| Taestivum_Traes_1BL_72B62E498.11 Traes_1BL_72B62E498.11 PAC:31858385 |
High | No | 1814 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -22.442 AMFE: -0.608 GC content %: 36.935 | |
| Taestivum_Traes_1BL_72B62E498.12 Traes_1BL_72B62E498.12 PAC:31858384 |
High | No | 777 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -22.059 AMFE: -0.610 GC content %: 36.165 | |
| Taestivum_Traes_1BL_72B62E498.3 Traes_1BL_72B62E498.3 PAC:31858379 |
High | No | 1010 | Get ORF Coding potential... Type: noncoding Potential: -1.350 Folding energies... MFEI: -33.505 AMFE: -0.665 GC content %: 50.396 | |
| Taestivum_Traes_1BL_72B62E498.4 Traes_1BL_72B62E498.4 PAC:31858375 |
High | No | 760 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -33.934 AMFE: -0.691 GC content %: 49.079 | |
| Taestivum_Traes_1BL_72B62E498.5 Traes_1BL_72B62E498.5 PAC:31858378 |
High | No | 458 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -34.520 AMFE: -0.640 GC content %: 53.930 | |
| Taestivum_Traes_1BL_72B62E498.6 Traes_1BL_72B62E498.6 PAC:31858377 |
High | No | 1342 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -29.307 AMFE: -0.683 GC content %: 42.921 | |
| Taestivum_Traes_1BL_72B62E498.7 Traes_1BL_72B62E498.7 PAC:31858376 |
High | No | 1373 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -29.592 AMFE: -0.691 GC content %: 42.826 | |
| Taestivum_Traes_1BL_72B62E498.8 Traes_1BL_72B62E498.8 PAC:31858380 |
High | No | 1240 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -28.282 AMFE: -0.664 GC content %: 42.581 | |
| Taestivum_Traes_1BL_72B62E498.9 Traes_1BL_72B62E498.9 PAC:31858381 |
High | No | 1071 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -24.753 AMFE: -0.592 GC content %: 41.830 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
