Gene
Taestivum Traes 1BL 79D11B199
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_79D11B199 Traes_1BL_79D11B199 |
ta_iwgsc_1bl_v1_3837236 | 484 | 7121 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_79D11B199.19 Traes_1BL_79D11B199.19 PAC:31927233 |
Low | No | 1005 | Get ORF Coding potential... Type: coding Potential: 0.713 Folding energies... MFEI: -28.209 AMFE: -0.639 GC content %: 44.179 | |
| Taestivum_Traes_1BL_79D11B199.28 Traes_1BL_79D11B199.28 PAC:31927241 |
Low | No | 777 | Get ORF Coding potential... Type: coding Potential: 0.079 Folding energies... MFEI: -27.915 AMFE: -0.620 GC content %: 45.045 | |
| Taestivum_Traes_1BL_79D11B199.31 Traes_1BL_79D11B199.31 PAC:31927245 |
High | No | 291 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -20.412 AMFE: -0.491 GC content %: 41.581 | |
| Taestivum_Traes_1BL_79D11B199.32 Traes_1BL_79D11B199.32 PAC:31927246 |
High | No | 623 | Get ORF Coding potential... Type: noncoding Potential: -0.128 Folding energies... MFEI: -27.624 AMFE: -0.604 GC content %: 45.746 | |
| Taestivum_Traes_1BL_79D11B199.33 Traes_1BL_79D11B199.33 PAC:31927247 |
High | No | 622 | Get ORF Coding potential... Type: noncoding Potential: -0.149 Folding energies... MFEI: -27.444 AMFE: -0.601 GC content %: 45.659 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
