GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_95B88D1BD Traes_1BL_95B88D1BD	ta_iwgsc_1bl_v1_1481894	2	952	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_95B88D1BD.1 Traes_1BL_95B88D1BD.1 PAC:31884274	High	No	497		Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -43.783 AMFE: -0.638 GC content %: 68.612
Taestivum_Traes_1BL_95B88D1BD.2 Traes_1BL_95B88D1BD.2 PAC:31884273	High	No	739		Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -36.522 AMFE: -0.620 GC content %: 58.863
Taestivum_Traes_1BL_95B88D1BD.3 Traes_1BL_95B88D1BD.3 PAC:31884275	High	No	951		Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -35.478 AMFE: -0.641 GC content %: 55.310

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).