Gene
Taestivum Traes 1BL A151C620A
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_A151C620A Traes_1BL_A151C620A |
ta_iwgsc_1bl_v1_3899279 | 861 | 6606 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_A151C620A.1 Traes_1BL_A151C620A.1 PAC:32018345 |
High | No | 1566 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -32.292 AMFE: -0.676 GC content %: 47.765 | |
| Taestivum_Traes_1BL_A151C620A.10 Traes_1BL_A151C620A.10 PAC:32018341 |
High | No | 282 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -37.766 AMFE: -0.602 GC content %: 62.766 | |
| Taestivum_Traes_1BL_A151C620A.11 Traes_1BL_A151C620A.11 PAC:32018351 |
High | No | 294 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -20.476 AMFE: -0.596 GC content %: 34.354 | |
| Taestivum_Traes_1BL_A151C620A.2 Traes_1BL_A151C620A.2 PAC:32018343 |
High | No | 1879 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -30.628 AMFE: -0.668 GC content %: 45.875 | |
| Taestivum_Traes_1BL_A151C620A.3 Traes_1BL_A151C620A.3 PAC:32018348 |
High | No | 1284 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -35.935 AMFE: -0.710 GC content %: 50.623 | |
| Taestivum_Traes_1BL_A151C620A.4 Traes_1BL_A151C620A.4 PAC:32018349 |
High | No | 1601 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -32.548 AMFE: -0.679 GC content %: 47.908 | |
| Taestivum_Traes_1BL_A151C620A.5 Traes_1BL_A151C620A.5 PAC:32018342 |
High | No | 2011 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -31.004 AMFE: -0.678 GC content %: 45.699 | |
| Taestivum_Traes_1BL_A151C620A.6 Traes_1BL_A151C620A.6 PAC:32018344 |
High | No | 1728 | Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -29.722 AMFE: -0.669 GC content %: 44.444 | |
| Taestivum_Traes_1BL_A151C620A.7 Traes_1BL_A151C620A.7 PAC:32018346 |
High | No | 1808 | Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -31.875 AMFE: -0.684 GC content %: 46.571 | |
| Taestivum_Traes_1BL_A151C620A.8 Traes_1BL_A151C620A.8 PAC:32018347 |
High | No | 1600 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -32.681 AMFE: -0.679 GC content %: 48.125 | |
| Taestivum_Traes_1BL_A151C620A.9 Traes_1BL_A151C620A.9 PAC:32018350 |
High | No | 1753 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -31.569 AMFE: -0.682 GC content %: 46.264 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
