GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BL_A5B67A114 Traes_1BL_A5B67A114	ta_iwgsc_1bl_v1_3853386	4	3842	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BL_A5B67A114.2 Traes_1BL_A5B67A114.2 PAC:31909236	High	No	2197		Get ORF Coding potential... Type: noncoding Potential: -0.759 Folding energies... MFEI: -28.894 AMFE: -0.640 GC content %: 45.152
Taestivum_Traes_1BL_A5B67A114.3 Traes_1BL_A5B67A114.3 PAC:31909237	High	No	1385		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -31.408 AMFE: -0.661 GC content %: 47.509
Taestivum_Traes_1BL_A5B67A114.4 Traes_1BL_A5B67A114.4 PAC:31909238	High	No	1301		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -29.908 AMFE: -0.672 GC content %: 44.504
Taestivum_Traes_1BL_A5B67A114.5 Traes_1BL_A5B67A114.5 PAC:31909239	High	No	398		Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -26.859 AMFE: -0.644 GC content %: 41.709

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).