Gene
Taestivum Traes 1BL EEE547F72
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BL_EEE547F72 Traes_1BL_EEE547F72 |
ta_iwgsc_1bl_v1_3814169 | 919 | 5712 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BL_EEE547F72.1 Traes_1BL_EEE547F72.1 PAC:31850330 |
High | No | 2954 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -31.212 AMFE: -0.706 GC content %: 44.211 | |
| Taestivum_Traes_1BL_EEE547F72.10 Traes_1BL_EEE547F72.10 PAC:31850329 |
High | No | 1858 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -33.202 AMFE: -0.696 GC content %: 47.686 | |
| Taestivum_Traes_1BL_EEE547F72.11 Traes_1BL_EEE547F72.11 PAC:31850328 |
High | No | 1924 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -32.755 AMFE: -0.699 GC content %: 46.830 | |
| Taestivum_Traes_1BL_EEE547F72.12 Traes_1BL_EEE547F72.12 PAC:31850327 |
High | No | 1812 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -32.908 AMFE: -0.693 GC content %: 47.517 | |
| Taestivum_Traes_1BL_EEE547F72.13 Traes_1BL_EEE547F72.13 PAC:31850331 |
High | No | 2271 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -31.207 AMFE: -0.701 GC content %: 44.518 | |
| Taestivum_Traes_1BL_EEE547F72.14 Traes_1BL_EEE547F72.14 PAC:31850332 |
High | No | 2241 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -31.374 AMFE: -0.700 GC content %: 44.801 | |
| Taestivum_Traes_1BL_EEE547F72.15 Traes_1BL_EEE547F72.15 PAC:31850334 |
High | No | 2395 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -31.023 AMFE: -0.703 GC content %: 44.134 | |
| Taestivum_Traes_1BL_EEE547F72.16 Traes_1BL_EEE547F72.16 PAC:31850333 |
High | No | 3244 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -30.244 AMFE: -0.702 GC content %: 43.064 | |
| Taestivum_Traes_1BL_EEE547F72.17 Traes_1BL_EEE547F72.17 PAC:31850337 |
High | No | 2227 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -31.226 AMFE: -0.699 GC content %: 44.679 | |
| Taestivum_Traes_1BL_EEE547F72.18 Traes_1BL_EEE547F72.18 PAC:31850335 |
High | No | 1931 | Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -32.600 AMFE: -0.702 GC content %: 46.453 | |
| Taestivum_Traes_1BL_EEE547F72.19 Traes_1BL_EEE547F72.19 PAC:31850336 |
High | No | 2086 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -31.544 AMFE: -0.697 GC content %: 45.254 | |
| Taestivum_Traes_1BL_EEE547F72.2 Traes_1BL_EEE547F72.2 PAC:31850319 |
High | No | 2769 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -31.524 AMFE: -0.710 GC content %: 44.420 | |
| Taestivum_Traes_1BL_EEE547F72.3 Traes_1BL_EEE547F72.3 PAC:31850324 |
High | No | 1947 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -32.686 AMFE: -0.704 GC content %: 46.430 | |
| Taestivum_Traes_1BL_EEE547F72.4 Traes_1BL_EEE547F72.4 PAC:31850323 |
High | No | 2768 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -31.488 AMFE: -0.709 GC content %: 44.400 | |
| Taestivum_Traes_1BL_EEE547F72.5 Traes_1BL_EEE547F72.5 PAC:31850320 |
High | No | 1853 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -32.677 AMFE: -0.698 GC content %: 46.789 | |
| Taestivum_Traes_1BL_EEE547F72.6 Traes_1BL_EEE547F72.6 PAC:31850321 |
High | No | 1824 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -32.922 AMFE: -0.699 GC content %: 47.094 | |
| Taestivum_Traes_1BL_EEE547F72.7 Traes_1BL_EEE547F72.7 PAC:31850322 |
High | No | 1662 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -33.412 AMFE: -0.694 GC content %: 48.135 | |
| Taestivum_Traes_1BL_EEE547F72.8 Traes_1BL_EEE547F72.8 PAC:31850326 |
High | No | 1761 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -32.959 AMFE: -0.692 GC content %: 47.643 | |
| Taestivum_Traes_1BL_EEE547F72.9 Traes_1BL_EEE547F72.9 PAC:31850325 |
High | No | 2095 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -33.045 AMFE: -0.703 GC content %: 47.017 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
