Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1BL_FE86EABF5 Traes_1BL_FE86EABF5 |
ta_iwgsc_1bl_v1_3760240 | 131 | 3038 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1BL_FE86EABF5.4 Traes_1BL_FE86EABF5.4 PAC:31757538 |
High | No | 756 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -28.333 AMFE: -0.614 GC content %: 46.164 | |
Taestivum_Traes_1BL_FE86EABF5.5 Traes_1BL_FE86EABF5.5 PAC:31757540 |
High | No | 530 | Get ORF Coding potential... Type: noncoding Potential: -0.744 Folding energies... MFEI: -32.000 AMFE: -0.645 GC content %: 49.623 | |
Taestivum_Traes_1BL_FE86EABF5.6 Traes_1BL_FE86EABF5.6 PAC:31757539 |
High | No | 800 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -27.462 AMFE: -0.594 GC content %: 46.250 | |
Taestivum_Traes_1BL_FE86EABF5.7 Traes_1BL_FE86EABF5.7 PAC:31757541 |
High | No | 477 | Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -30.398 AMFE: -0.636 GC content %: 47.799 |