GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BS_282862C32 Traes_1BS_282862C32	ta_iwgsc_1bs_v1_1495708	42	1428	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BS_282862C32.1 Traes_1BS_282862C32.1 PAC:31748146	High	No	581		Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -23.614 AMFE: -0.540 GC content %: 43.718
Taestivum_Traes_1BS_282862C32.2 Traes_1BS_282862C32.2 PAC:31748147	High	No	506		Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -23.814 AMFE: -0.540 GC content %: 44.071
Taestivum_Traes_1BS_282862C32.3 Traes_1BS_282862C32.3 PAC:31748148	High	No	1243		Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -23.451 AMFE: -0.607 GC content %: 38.616

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).