GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1BS_F9B6B9C50 Traes_1BS_F9B6B9C50	ta_iwgsc_1bs_v1_3417414	3309	4209	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1BS_F9B6B9C50.1 Traes_1BS_F9B6B9C50.1 PAC:31911263	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -44.526 AMFE: -0.689 GC content %: 64.605
Taestivum_Traes_1BS_F9B6B9C50.2 Traes_1BS_F9B6B9C50.2 PAC:31911262	Low	Yes	559		Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -54.222 AMFE: -0.732 GC content %: 74.061

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).