Gene
Taestivum Traes 1BS FBF1374A6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BS_FBF1374A6 Traes_1BS_FBF1374A6 |
ta_iwgsc_1bs_v1_3445512 | 2145 | 9622 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BS_FBF1374A6.10 Traes_1BS_FBF1374A6.10 PAC:31788279 |
High | No | 1129 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.112 AMFE: -0.610 GC content %: 44.464 | |
| Taestivum_Traes_1BS_FBF1374A6.11 Traes_1BS_FBF1374A6.11 PAC:31788280 |
High | No | 1523 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -25.988 AMFE: -0.627 GC content %: 41.431 | |
| Taestivum_Traes_1BS_FBF1374A6.12 Traes_1BS_FBF1374A6.12 PAC:31788282 |
High | No | 1623 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -25.730 AMFE: -0.627 GC content %: 41.035 | |
| Taestivum_Traes_1BS_FBF1374A6.13 Traes_1BS_FBF1374A6.13 PAC:31788283 |
High | No | 1625 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -25.655 AMFE: -0.625 GC content %: 41.046 | |
| Taestivum_Traes_1BS_FBF1374A6.14 Traes_1BS_FBF1374A6.14 PAC:31788287 |
High | No | 1131 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -26.888 AMFE: -0.609 GC content %: 44.120 | |
| Taestivum_Traes_1BS_FBF1374A6.15 Traes_1BS_FBF1374A6.15 PAC:31788285 |
High | No | 1669 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -25.620 AMFE: -0.625 GC content %: 40.983 | |
| Taestivum_Traes_1BS_FBF1374A6.16 Traes_1BS_FBF1374A6.16 PAC:31788288 |
High | No | 1498 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.961 AMFE: -0.625 GC content %: 41.522 | |
| Taestivum_Traes_1BS_FBF1374A6.17 Traes_1BS_FBF1374A6.17 PAC:31788286 |
High | No | 1048 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -25.592 AMFE: -0.579 GC content %: 44.179 | |
| Taestivum_Traes_1BS_FBF1374A6.2 Traes_1BS_FBF1374A6.2 PAC:31788272 |
High | No | 1442 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -25.569 AMFE: -0.624 GC content %: 40.985 | |
| Taestivum_Traes_1BS_FBF1374A6.22 Traes_1BS_FBF1374A6.22 PAC:31788293 |
High | No | 1440 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -24.062 AMFE: -0.625 GC content %: 38.472 | |
| Taestivum_Traes_1BS_FBF1374A6.3 Traes_1BS_FBF1374A6.3 PAC:31788273 |
High | No | 940 | Get ORF Coding potential... Type: noncoding Potential: -0.788 Folding energies... MFEI: -27.968 AMFE: -0.623 GC content %: 44.894 | |
| Taestivum_Traes_1BS_FBF1374A6.6 Traes_1BS_FBF1374A6.6 PAC:31788276 |
High | No | 1267 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -26.803 AMFE: -0.595 GC content %: 45.067 | |
| Taestivum_Traes_1BS_FBF1374A6.7 Traes_1BS_FBF1374A6.7 PAC:31788277 |
High | No | 1265 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -27.020 AMFE: -0.616 GC content %: 43.874 | |
| Taestivum_Traes_1BS_FBF1374A6.8 Traes_1BS_FBF1374A6.8 PAC:31788278 |
High | No | 1215 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -27.053 AMFE: -0.614 GC content %: 44.033 | |
| Taestivum_Traes_1BS_FBF1374A6.9 Traes_1BS_FBF1374A6.9 PAC:31788281 |
High | No | 1051 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -26.099 AMFE: -0.584 GC content %: 44.719 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
