Gene
Taestivum Traes 1BS FD4687509
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1BS_FD4687509 Traes_1BS_FD4687509 |
ta_iwgsc_1bs_v1_3462460 | 4458 | 8825 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1BS_FD4687509.10 Traes_1BS_FD4687509.10 PAC:31892205 |
Low | No | 793 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -30.126 AMFE: -0.667 GC content %: 45.145 | |
| Taestivum_Traes_1BS_FD4687509.13 Traes_1BS_FD4687509.13 PAC:31892203 |
Low | No | 878 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -28.485 AMFE: -0.650 GC content %: 43.850 | |
| Taestivum_Traes_1BS_FD4687509.14 Traes_1BS_FD4687509.14 PAC:31892208 |
High | No | 715 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -30.112 AMFE: -0.662 GC content %: 45.455 | |
| Taestivum_Traes_1BS_FD4687509.6 Traes_1BS_FD4687509.6 PAC:31892200 |
High | No | 613 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -33.834 AMFE: -0.634 GC content %: 53.344 | |
| Taestivum_Traes_1BS_FD4687509.8 Traes_1BS_FD4687509.8 PAC:31892202 |
Low | No | 880 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -28.580 AMFE: -0.653 GC content %: 43.750 | |
| Taestivum_Traes_1BS_FD4687509.9 Traes_1BS_FD4687509.9 PAC:31892207 |
Low | No | 751 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -30.280 AMFE: -0.669 GC content %: 45.273 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
