GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_03FCF0D83 Traes_1DL_03FCF0D83	ta_iwgsc_1dl_v1_2290990	3	12446	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_03FCF0D83.3 Traes_1DL_03FCF0D83.3 PAC:31888181	High	No	619		Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -21.535 AMFE: -0.567 GC content %: 37.964
Taestivum_Traes_1DL_03FCF0D83.4 Traes_1DL_03FCF0D83.4 PAC:31888182	High	No	840		Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -23.083 AMFE: -0.616 GC content %: 37.500
Taestivum_Traes_1DL_03FCF0D83.5 Traes_1DL_03FCF0D83.5 PAC:31888183	High	No	435		Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -25.402 AMFE: -0.642 GC content %: 39.540

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).