GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_15ED6EAC4 Traes_1DL_15ED6EAC4	ta_iwgsc_1dl_v1_2253810	3116	3932	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_15ED6EAC4.1 Traes_1DL_15ED6EAC4.1 PAC:31768948	Low	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.476 Folding energies... MFEI: -36.578 AMFE: -0.549 GC content %: 66.667
Taestivum_Traes_1DL_15ED6EAC4.2 Traes_1DL_15ED6EAC4.2 PAC:31768947	Low	No	609		Get ORF Coding potential... Type: noncoding Potential: -0.498 Folding energies... MFEI: -31.593 AMFE: -0.551 GC content %: 57.307
Taestivum_Traes_1DL_15ED6EAC4.3 Traes_1DL_15ED6EAC4.3 PAC:31768949	Low	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -37.763 AMFE: -0.563 GC content %: 67.123

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).