GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_368F427E3 Traes_1DL_368F427E3	ta_iwgsc_1dl_v1_2234547	367	7019	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_368F427E3.2 Traes_1DL_368F427E3.2 PAC:31878020	High	No	526		Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -29.848 AMFE: -0.625 GC content %: 47.719
Taestivum_Traes_1DL_368F427E3.3 Traes_1DL_368F427E3.3 PAC:31878021	High	No	272		Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -23.125 AMFE: -0.511 GC content %: 45.221
Taestivum_Traes_1DL_368F427E3.4 Traes_1DL_368F427E3.4 PAC:31878019	Low	No	1068		Get ORF Coding potential... Type: coding Potential: 0.291 Folding energies... MFEI: -33.324 AMFE: -0.639 GC content %: 52.154

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).