GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_3DC184911 Traes_1DL_3DC184911	ta_iwgsc_1dl_v1_2290990	12686	15923	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_3DC184911.4 Traes_1DL_3DC184911.4 PAC:31888177	High	No	206		Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -27.039 AMFE: -0.516 GC content %: 52.427
Taestivum_Traes_1DL_3DC184911.5 Traes_1DL_3DC184911.5 PAC:31888178	High	No	247		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.194 AMFE: -0.530 GC content %: 49.393

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).