GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_657020E08 Traes_1DL_657020E08	ta_iwgsc_1dl_v1_2261998	3408	4300	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_657020E08.1 Traes_1DL_657020E08.1 PAC:31967979	Low	No	354		Get ORF Coding potential... Type: noncoding Potential: -0.870 Folding energies... MFEI: -22.090 AMFE: -0.559 GC content %: 39.548
Taestivum_Traes_1DL_657020E08.2 Traes_1DL_657020E08.2 PAC:31967980	Low	No	693		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -23.189 AMFE: -0.651 GC content %: 35.642

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).