Gene
Taestivum Traes 1DL 7589A1385
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1DL_7589A1385 Traes_1DL_7589A1385 |
ta_iwgsc_1dl_v1_189311 | 4092 | 12114 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1DL_7589A1385.11 Traes_1DL_7589A1385.11 PAC:31841631 |
Low | No | 1290 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -23.744 AMFE: -0.536 GC content %: 44.264 | |
| Taestivum_Traes_1DL_7589A1385.12 Traes_1DL_7589A1385.12 PAC:31841632 |
High | No | 1571 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -25.245 AMFE: -0.586 GC content %: 43.094 | |
| Taestivum_Traes_1DL_7589A1385.13 Traes_1DL_7589A1385.13 PAC:31841633 |
High | No | 1169 | Get ORF Coding potential... Type: noncoding Potential: -1.366 Folding energies... MFEI: -24.157 AMFE: -0.541 GC content %: 44.654 | |
| Taestivum_Traes_1DL_7589A1385.14 Traes_1DL_7589A1385.14 PAC:31841634 |
High | No | 887 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -25.039 AMFE: -0.554 GC content %: 45.209 | |
| Taestivum_Traes_1DL_7589A1385.15 Traes_1DL_7589A1385.15 PAC:31841636 |
High | No | 2308 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -25.511 AMFE: -0.596 GC content %: 42.808 | |
| Taestivum_Traes_1DL_7589A1385.16 Traes_1DL_7589A1385.16 PAC:31841635 |
High | No | 2490 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -24.988 AMFE: -0.587 GC content %: 42.570 | |
| Taestivum_Traes_1DL_7589A1385.17 Traes_1DL_7589A1385.17 PAC:31841637 |
High | No | 813 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -25.264 AMFE: -0.529 GC content %: 47.724 | |
| Taestivum_Traes_1DL_7589A1385.21 Traes_1DL_7589A1385.21 PAC:31841641 |
High | No | 849 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -25.960 AMFE: -0.554 GC content %: 46.879 | |
| Taestivum_Traes_1DL_7589A1385.7 Traes_1DL_7589A1385.7 PAC:31841642 |
High | No | 353 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -19.292 AMFE: -0.524 GC content %: 36.827 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
