Gene
Taestivum Traes 1DL 83FF6472E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1DL_83FF6472E Traes_1DL_83FF6472E |
ta_iwgsc_1dl_v1_313501 | 21 | 2054 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1DL_83FF6472E.2 Traes_1DL_83FF6472E.2 PAC:31820981 |
High | No | 881 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -27.650 AMFE: -0.629 GC content %: 43.927 | |
| Taestivum_Traes_1DL_83FF6472E.3 Traes_1DL_83FF6472E.3 PAC:31820984 |
High | No | 1341 | Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -26.823 AMFE: -0.621 GC content %: 43.177 | |
| Taestivum_Traes_1DL_83FF6472E.4 Traes_1DL_83FF6472E.4 PAC:31820982 |
High | No | 1348 | Get ORF Coding potential... Type: noncoding Potential: -0.550 Folding energies... MFEI: -27.226 AMFE: -0.639 GC content %: 42.582 | |
| Taestivum_Traes_1DL_83FF6472E.5 Traes_1DL_83FF6472E.5 PAC:31820985 |
High | No | 1028 | Get ORF Coding potential... Type: noncoding Potential: -0.327 Folding energies... MFEI: -27.733 AMFE: -0.625 GC content %: 44.358 | |
| Taestivum_Traes_1DL_83FF6472E.6 Traes_1DL_83FF6472E.6 PAC:31820983 |
High | No | 1328 | Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -25.934 AMFE: -0.634 GC content %: 40.889 | |
| Taestivum_Traes_1DL_83FF6472E.7 Traes_1DL_83FF6472E.7 PAC:31820986 |
High | No | 954 | Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -26.488 AMFE: -0.615 GC content %: 43.082 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
