GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1DL_8E3FC736B Traes_1DL_8E3FC736B	ta_iwgsc_1dl_v1_2234781	1	540	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1DL_8E3FC736B.1 Traes_1DL_8E3FC736B.1 PAC:31745206	High	No	540		Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -25.333 AMFE: -0.516 GC content %: 49.074
Taestivum_Traes_1DL_8E3FC736B.2 Traes_1DL_8E3FC736B.2 PAC:31745207	High	No	213		Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -25.634 AMFE: -0.475 GC content %: 53.991

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).